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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_111280327_111280612_R

Intron Information:

Intron Rank:
36
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
111280327 - 111280612
Intron Length:
286

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGCTGTT
5'SS Class:
major
3'SS Sequence:
CTTCCTTGCCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTAAT
U12 Branch Point Sequence:
TGGTTGTTAATA
Flanking Amino Acid:
KSYTPNKKSKIYSMTLRLSA
Intron Amino Acid Position:
1402

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.9
0.59
1.2
76.2
39.9
Major BPS
84.4
0.85
1
84
34.5
Major PPT
71
0.47
0.9
64.9
36.3
Minor 5ss
42.8
-0.8
3.6
66.4
45.1
Minor BPS
55.7
0.17
2
67.12
40

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014570
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015277
111268416 - 111324851
56436