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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_111282003_111282616_R

Intron Information:

Intron Rank:
34
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
111282003 - 111282616
Intron Length:
614

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTGAGTTGG
5'SS Class:
major
3'SS Sequence:
TTTGTTTTTCAAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATAAA
U12 Branch Point Sequence:
GTCTTCTGACTT
Flanking Amino Acid:
RPRTSYRRRRGQGRKGKGIK
Intron Amino Acid Position:
1303

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.9
0.47
1.1
59.5
42.3
Major BPS
70.8
0.52
1
70.6
31.6
Major PPT
80.1
0.68
1
79.2
38.4
Minor 5ss
35.4
-1.7
2.8
36.7
41.6
Minor BPS
50.9
0.11
1.7
68.72
42.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014570
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015277
111268416 - 111324851
56436