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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_111282662_111283912_R

Intron Information:

Intron Rank:
33
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
111282662 - 111283912
Intron Length:
1251

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGCTTT
5'SS Class:
strong_major
3'SS Sequence:
TTATTTTATGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TGTTTCATAAAT
Flanking Amino Acid:
EQDCLDDDDLDDEKCRPRTS
Intron Amino Acid Position:
1288

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.6
0.81
0.9
80.5
34.9
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
85
0.79
0.9
81.5
34.9
Minor 5ss
49.9
-0
2.8
70.4
41.2
Minor BPS
64.2
0.52
1.7
83.06
37.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014570
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015277
111268416 - 111324851
56436