About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_111283992_111284632_R

Intron Information:

Intron Rank:
32
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
111283992 - 111284632
Intron Length:
641

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTGAGTGGC
5'SS Class:
major
3'SS Sequence:
AATTGCATTACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTAAT
U12 Branch Point Sequence:
ATTCCAGTAACA
Flanking Amino Acid:
KITTQLLKFINDQDCTNIFE
Intron Amino Acid Position:
1261

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
0.9
69.4
35.6
Major BPS
85.7
0.89
0.8
84
22.2
Major PPT
71.6
0.49
1
62.9
42.2
Minor 5ss
29.3
-2.4
3.1
34.7
35.3
Minor BPS
52.2
0.07
2.2
72.86
38.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014570
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015277
111268416 - 111324851
56436