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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_111286984_111290677_R

Intron Information:

Intron Rank:
29
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
111286984 - 111290677
Intron Length:
3694

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAGGTAGA
5'SS Class:
major
3'SS Sequence:
TATCACTCTTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCCTAT
U12 Branch Point Sequence:
TTTTTCCTATTT
Flanking Amino Acid:
PWDMEPISDNVDQPEELGAS
Intron Amino Acid Position:
1127

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.6
0.67
1
70.7
41.3
Major BPS
68.8
0.47
1.3
66.7
41.7
Major PPT
78.1
0.63
0.9
74.2
35.9
Minor 5ss
33.8
-1.8
3
39
41.4
Minor BPS
60.1
0.4
1.9
84.08
37

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014570
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015277
111268416 - 111324851
56436