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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_111295796_111295901_R

Intron Information:

Intron Rank:
26
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
111295796 - 111295901
Intron Length:
106

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTATGTGCA
5'SS Class:
major
3'SS Sequence:
CTTTTTAACCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
TTCTTTTTAACC
Flanking Amino Acid:
GKHTDKSFSIKYHDMPDVID
Intron Amino Acid Position:
1041

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.2
0.64
1
70.5
33.4
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
73
0.52
0.9
67.1
38.2
Minor 5ss
40.8
-1
3
49.9
40.8
Minor BPS
78.9
0.89
1.1
81.25
33.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014570
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015277
111268416 - 111324851
56436