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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_111296027_111296408_R

Intron Information:

Intron Rank:
25
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
111296027 - 111296408
Intron Length:
382

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGTCTG
5'SS Class:
strong_major
3'SS Sequence:
TTCTTACCTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTCAT
U12 Branch Point Sequence:
TCATTCTTACCT
Flanking Amino Acid:
KEPWRKVVLRDQELVKIVGI
Intron Amino Acid Position:
1000

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.1
0.83
1
72.7
44.5
Major BPS
84.8
0.86
1
85.7
34.9
Major PPT
79.5
0.66
0.7
74.8
29.3
Minor 5ss
37.4
-1.4
3
42.1
44.4
Minor BPS
67.4
0.62
1.6
80
42.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014570
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015277
111268416 - 111324851
56436