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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_111296743_111297632_R

Intron Information:

Intron Rank:
23
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
111296743 - 111297632
Intron Length:
890

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTATACAAC
5'SS Class:
weak_major
3'SS Sequence:
CTTAAATATGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTAAA
U12 Branch Point Sequence:
TGTCTCTTAAAT
Flanking Amino Acid:
KKPRPKKQEGANAPSEPVNS
Intron Amino Acid Position:
925

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
63.4
0.32
1.1
58.3
40.9
Major BPS
77.8
0.69
1
78.2
31.8
Major PPT
65.7
0.35
1
59.5
40.6
Minor 5ss
44.7
-0.6
2.7
51.2
45.9
Minor BPS
71.4
0.75
1.4
83.62
36.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014570
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015277
111268416 - 111324851
56436