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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_111297829_111298702_R

Intron Information:

Intron Rank:
22
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
111297829 - 111298702
Intron Length:
874

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAAGCA
5'SS Class:
strong_major
3'SS Sequence:
CCACTGTGGTCAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTGTAT
U12 Branch Point Sequence:
CTTTCCTGATCC
Flanking Amino Acid:
SDKKSNTNSSSDSSSRYSDW
Intron Amino Acid Position:
859

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.2
0.74
0.9
71.1
32.5
Major BPS
71.5
0.53
1.4
71.7
44.6
Major PPT
57.7
0.17
1.1
56.7
43.2
Minor 5ss
30.1
-2.3
3.3
39.5
45.9
Minor BPS
63.7
0.41
1.8
75.27
41.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014570
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015277
111268416 - 111324851
56436