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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_111298789_111300784_R

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
111298789 - 111300784
Intron Length:
1996

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTTCT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTAAATTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TATTTTTAAATT
Flanking Amino Acid:
REDCLGLMEQEAEESEGSGS
Intron Amino Acid Position:
831

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.3
1.11
0.7
90.5
21.5
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
81.5
0.71
0.9
79.7
36.9
Minor 5ss
42.8
-0.8
2.8
59.5
45
Minor BPS
64.5
0.53
1.6
80
36.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014570
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015277
111268416 - 111324851
56436