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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_111300926_111301670_R

Intron Information:

Intron Rank:
20
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
111300926 - 111301670
Intron Length:
745

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGCAAC
5'SS Class:
strong_major
3'SS Sequence:
CTACGTAAATTAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TGTACAT
U12 Branch Point Sequence:
TTTTGTGTAACT
Flanking Amino Acid:
AEKKRKSFEKSDSESSLIQS
Intron Amino Acid Position:
784

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.5
0.77
1
74
36.6
Major BPS
67.6
0.44
1.2
75
40
Major PPT
54.3
0.1
1
53
40.4
Minor 5ss
45.8
-0.4
2.6
59.7
45.1
Minor BPS
59
0.36
2.4
87.23
39

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014570
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015277
111268416 - 111324851
56436