Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_111308574_111309223_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

111308574 - 111309223

Intron Length:

650

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AGG|GTAAGTGAA

5'SS Class:

strong_major

3'SS Sequence:

CTCTTTAAAATAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ATCTCAT

U12 Branch Point Sequence:

AACTCTTTAAAA

Flanking Amino Acid:

ILLDMSDRLPGDACSEEDKF

Intron Amino Acid Position:

419

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.7

0.86

0.9

77.6

32.8

Major BPS

86.1

0.9

0.7

85.7

22.9

Major PPT

65.9

0.36

63.2

36.1

Minor 5ss

31.6

-2.1

3.1

31.7

42.6

Minor BPS

66.3

0.51

1.4

68.19

37.9

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000014570

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000015277

111268416 - 111324851

56436