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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_111314329_111315123_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
111314329 - 111315123
Intron Length:
795

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTATGTAAC
5'SS Class:
major
3'SS Sequence:
CTTCTTTTTGTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTCAA
U12 Branch Point Sequence:
TTTCAAGCAACT
Flanking Amino Acid:
WQWDTDSMKFNNRPVKFTEK
Intron Amino Acid Position:
315

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.1
0.69
1
76.9
31.7
Major BPS
73
0.57
1.2
77.7
37.1
Major PPT
87.6
0.85
0.6
84.2
23.7
Minor 5ss
43.8
-0.7
2.5
54.1
37.3
Minor BPS
43.4
-0.4
2.4
72.5
43.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014570
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015277
111268416 - 111324851
56436