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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_111318253_111318846_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
111318253 - 111318846
Intron Length:
594

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACT|GTGAGTTGA
5'SS Class:
major
3'SS Sequence:
TATTTCTTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
TGATAAATATTT
Flanking Amino Acid:
FDRTGHRIFTGSDDCLVKIW
Intron Amino Acid Position:
208

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70
0.47
1.1
64.4
38.1
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
84.9
0.78
0.7
77.9
36.1
Minor 5ss
37
-1.5
2.9
50
46.3
Minor BPS
41.7
-0.5
2.1
61.34
41.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014570
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015277
111268416 - 111324851
56436