About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_111319008_111319567_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
111319008 - 111319567
Intron Length:
560

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGCCTT
5'SS Class:
strong_major
3'SS Sequence:
CTTTGTGTTCTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
AATTCTTTGATT
Flanking Amino Acid:
PVNYGAPPNLVEVYRAKHLT
Intron Amino Acid Position:
154

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.6
0.77
1
74.5
41.9
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
77.1
0.61
0.9
69.2
41.8
Minor 5ss
43.9
-0.7
3.2
62.5
43.1
Minor BPS
73.7
0.83
1.1
81.83
33.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014570
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015277
111268416 - 111324851
56436