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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_111324144_111324326_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
111324144 - 111324326
Intron Length:
183

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCTGTGTG
5'SS Class:
major
3'SS Sequence:
TTCCTCTGCTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTTAT
U12 Branch Point Sequence:
TCCCCTCTAACT
Flanking Amino Acid:
VLVQELEQHQLLPKRLDWEG
Intron Amino Acid Position:
51

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.9
0.54
1.3
68.8
42.3
Major BPS
74.8
0.62
0.9
63.7
35.1
Major PPT
72.8
0.51
0.8
72.8
32
Minor 5ss
37.8
-1.4
3.1
49.2
47.1
Minor BPS
58.3
0.34
1.7
73.75
43.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014570
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015277
111268416 - 111324851
56436