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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_111328589_111330684_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
111328589 - 111330684
Intron Length:
2096

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAATTGT
5'SS Class:
strong_major
3'SS Sequence:
CCCTTCTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TTCACGTTAAAG
Flanking Amino Acid:
AENGETKSEETQASDAAVEK
Intron Amino Acid Position:
78

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.9
81.2
33.8
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
85.6
0.8
0.7
83.4
24.9
Minor 5ss
41.3
-1
3
58.7
45.8
Minor BPS
49.5
-0.1
2.3
61.29
46.1

Associated Gene:

Gene:
HMGN1
Ensembl Gene ID:
ENSAPLG00000030604
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033689
111328541 - 111333366
4826