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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_111330817_111333267_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
111330817 - 111333267
Intron Length:
2451

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGAGAG
5'SS Class:
strong_major
3'SS Sequence:
GATTTAATTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
ATTGATTTAATT
Flanking Amino Acid:
EPKPKKLAAKDKSEDKKAQS
Intron Amino Acid Position:
34

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.6
0.84
0.8
71.2
34.6
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
70.7
0.47
1
64.1
41.4
Minor 5ss
24.3
-3
3.1
28.4
43.8
Minor BPS
63.7
0.51
1.6
78.91
37.7

Associated Gene:

Gene:
HMGN1
Ensembl Gene ID:
ENSAPLG00000030604
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033689
111328541 - 111333366
4826