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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_111336066_111337495_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
111336066 - 111337495
Intron Length:
1430

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAGAGTGC
5'SS Class:
major
3'SS Sequence:
TTTCTTTCAACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATACAT
U12 Branch Point Sequence:
TTTCTTTCAACA
Flanking Amino Acid:
NKMTDKLKTHVKARTAQLAK
Intron Amino Acid Position:
42

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
61.6
0.27
1.1
50.8
41.1
Major BPS
74.9
0.62
1
81.3
29.9
Major PPT
84.2
0.77
0.8
81.3
29.2
Minor 5ss
35.2
-1.7
3.6
46.4
44.5
Minor BPS
65.3
0.48
1.5
76.67
34

Associated Gene:

Gene:
GET1
Ensembl Gene ID:
ENSAPLG00000023365
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030654
111335900 - 111341459
5560