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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_111337564_111338434_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
111337564 - 111338434
Intron Length:
871

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
ATTTCCACTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTGAA
U12 Branch Point Sequence:
TGTTACTGAAGC
Flanking Amino Acid:
VINIVFYIVQAALMISLIWK
Intron Amino Acid Position:
65

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.7
0.89
0.9
86
23.6
Major BPS
74.4
0.61
0.9
63.6
35.5
Major PPT
73.3
0.53
0.8
64.5
37.1
Minor 5ss
36.8
-1.5
2.7
42.6
38.4
Minor BPS
53.9
0.1
2
69.44
41.4

Associated Gene:

Gene:
GET1
Ensembl Gene ID:
ENSAPLG00000023365
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030654
111335900 - 111341459
5560