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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_111338550_111339792_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
111338550 - 111339792
Intron Length:
1243

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGACA
5'SS Class:
strong_major
3'SS Sequence:
GTATCTCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTGAT
U12 Branch Point Sequence:
TGTTTTGTATCT
Flanking Amino Acid:
RLVAFPTGVAGGVGITCWLV
Intron Amino Acid Position:
103

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.8
0.96
0.8
81.4
32.1
Major BPS
83.5
0.83
0.8
71.6
36.4
Major PPT
80.8
0.69
0.9
77.6
36.5
Minor 5ss
32.5
-2
3.1
40.7
45.3
Minor BPS
49.5
0.04
2.2
75.62
41.6

Associated Gene:

Gene:
GET1
Ensembl Gene ID:
ENSAPLG00000023365
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030654
111335900 - 111341459
5560