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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_111343591_111345290_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
111343591 - 111345290
Intron Length:
1700

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACATTTT
5'SS Class:
strong_major
3'SS Sequence:
TATTCCATTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTTAA
U12 Branch Point Sequence:
CATTCCTAAAAA
Flanking Amino Acid:
KPEPFSRRHREYLEEDKPLT
Intron Amino Acid Position:
397

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80
0.71
1
81.4
33.4
Major BPS
70.7
0.51
0.9
61.7
35.7
Major PPT
81.9
0.72
0.8
78.7
34.1
Minor 5ss
44.4
-0.6
3.2
67
44.3
Minor BPS
60.6
0.33
1.8
69.79
42.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021983
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035183
111343013 - 111358101
15089
ENSAPLT00000015052
111343013 - 111358101
15089