About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_111406178_111407517_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
111406178 - 111407517
Intron Length:
1340

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTGAGCGTG
5'SS Class:
major
3'SS Sequence:
GTTTCCCAAACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCCCAA
U12 Branch Point Sequence:
GTTTCCCAAACA
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.7
0.58
1
66
40.1
Major BPS
63.1
0.33
1.2
72.7
34.3
Major PPT
68.5
0.42
1
63.4
37.3
Minor 5ss
36.2
-1.6
3.5
46.7
43.3
Minor BPS
60.5
0.33
2
77.12
39.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019280
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017990
111406089 - 111409058
2970