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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_111416717_111423360_R

Intron Information:

Intron Rank:
139432
Intron Class:
major
Intron Phase:
Intron Coordinates:
111416717 - 111423360
Intron Length:
6644

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTAAGTTGA
5'SS Class:
major
3'SS Sequence:
CTATTTTTTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
TATTTTTTACAG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.1
0.61
1
69.1
38.5
Major BPS
85
0.87
0.8
85.6
23
Major PPT
88.3
0.86
0.7
83.4
31.4
Minor 5ss
41.8
-0.9
2.8
54.8
43.5
Minor BPS
52.8
-0
1.8
60.98
41.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022500
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045258
111413908 - 111423381
9474