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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_111433593_111434644_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
111433593 - 111434644
Intron Length:
1052

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTATA
5'SS Class:
strong_major
3'SS Sequence:
TTCCCTCCCACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
CTATTCTGAAGG
Flanking Amino Acid:
ESSFAFLSVQVNGSLFIKNS
Intron Amino Acid Position:
127

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.9
0.96
0.8
88.8
25
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
77.9
0.63
0.7
72.3
26
Minor 5ss
45.4
-0.5
2.5
59.5
45.1
Minor BPS
49.7
-0.1
1.9
56.41
44.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014415
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015025
111426663 - 111452643
25981
ENSAPLT00000015013
111426663 - 111444485
17823