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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_111434954_111439059_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
111434954 - 111439059
Intron Length:
4106

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTGAA
5'SS Class:
strong_major
3'SS Sequence:
TTTAATTTAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TTTAATTTAACA
Flanking Amino Acid:
ITVFFVNSTSENGYSEDSIS
Intron Amino Acid Position:
230

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.3
1.09
0.7
86.7
22.1
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
78.1
0.63
1
73.7
40.2
Minor 5ss
32
-2.1
3.1
39.9
46.1
Minor BPS
71.4
0.67
1.5
81.25
33.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014415
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015013
111426663 - 111444485
17823
ENSAPLT00000015025
111426663 - 111452643
25981