About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_111444372_111452574_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
111444372 - 111452574
Intron Length:
8203

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATTGTA
5'SS Class:
strong_major
3'SS Sequence:
CATTCTGTCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTCAT
U12 Branch Point Sequence:
AGTTCTGTAACT
Flanking Amino Acid:
ADLQTRSAQKGQPQKRTDHL
Intron Amino Acid Position:
345

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.2
0.88
0.9
83.4
28.2
Major BPS
87.6
0.93
0.9
89.3
26
Major PPT
69.5
0.44
0.9
61.6
39.6
Minor 5ss
36.3
-1.5
3.3
49.5
46.6
Minor BPS
64.5
0.53
2
82.97
38.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014415
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015025
111426663 - 111452643
25981