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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_111489041_111521372_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
111489041 - 111521372
Intron Length:
32332

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAAGGGTA
5'SS Class:
strong_major
3'SS Sequence:
TTTCCTTGGGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTGAT
U12 Branch Point Sequence:
ATATACTGATGT
Flanking Amino Acid:
NGKDKTSGENDGQKKVQEEF
Intron Amino Acid Position:
85

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
1
73.5
37.5
Major BPS
83.5
0.83
0.8
71.6
36.4
Major PPT
74.3
0.55
1
72.7
37.5
Minor 5ss
33.3
-1.9
3.7
47.1
48.3
Minor BPS
45.1
-0.2
2.1
65.52
44.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030900
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018991
111468867 - 111521736
52870