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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_1115030_1116012_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1115030 - 1116012
Intron Length:
983

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGAAAC
5'SS Class:
strong_major
3'SS Sequence:
CTCGCCTCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAC
U12 Branch Point Sequence:
GCTTTCTGACTT
Flanking Amino Acid:
CTQPADYAELDALGKAAANA
Intron Amino Acid Position:
329

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.3
0.71
0.9
72.9
31.2
Major BPS
81.4
0.78
0.9
71.3
36.7
Major PPT
75.7
0.58
0.8
69
31.5
Minor 5ss
28.5
-2.5
2.8
31.7
36.2
Minor BPS
51.5
0.12
1.7
68.72
42.7

Associated Gene:

Gene:
CPA2
Ensembl Gene ID:
ENSAPLG00000005551
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005786
1114443 - 1122885
8443