About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_1117084_1117824_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1117084 - 1117824
Intron Length:
741

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTCACTTTG
5'SS Class:
major
3'SS Sequence:
TGCCTCTGCATAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGATAAT
U12 Branch Point Sequence:
TGTGCCTTATTG
Flanking Amino Acid:
QASAMWIAKKLASDYGNDPS
Intron Amino Acid Position:
195

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.2
0.43
1.4
69.7
43.7
Major BPS
72.6
0.56
1.2
72.3
40.4
Major PPT
65.1
0.34
0.9
60.4
35.4
Minor 5ss
44.8
-0.6
2.7
58.8
45.7
Minor BPS
58.2
0.12
1.8
63.81
44.5

Associated Gene:

Gene:
CPA2
Ensembl Gene ID:
ENSAPLG00000005551
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005786
1114443 - 1122885
8443