About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_111709733_111721264_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
111709733 - 111721264
Intron Length:
11532

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGATTG
5'SS Class:
strong_major
3'SS Sequence:
TATTTTGTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTCTAT
U12 Branch Point Sequence:
TCTTTTCTATTT
Flanking Amino Acid:
TSQSVHVTVKVPPFIQPFEF
Intron Amino Acid Position:
455

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.8
0.99
0.8
81.6
33.2
Major BPS
73.8
0.59
1.3
72.8
43
Major PPT
86.8
0.83
0.8
84.8
35.4
Minor 5ss
41.6
-0.9
3.1
55.7
48.5
Minor BPS
49.4
0.03
1.9
71.32
40.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022017
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028239
111555616 - 111733883
178268
ENSAPLT00000041510
111555616 - 111773710
218095