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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_111733796_111773679_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
111733796 - 111773679
Intron Length:
39884

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TTGTGTCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
ATATTTTAAACA
Flanking Amino Acid:
MDSLQMKLRKGPRFLITSTG
Intron Amino Acid Position:
11

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.8
0.87
1
89
25.8
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
83.9
0.76
0.9
81.2
36.5
Minor 5ss
42.5
-0.8
2.8
59
45.4
Minor BPS
60.7
0.33
1.6
69.76
36.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022017
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041510
111555616 - 111773710
218095