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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_1117927_1118410_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1117927 - 1118410
Intron Length:
484

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGGTCA
5'SS Class:
strong_major
3'SS Sequence:
CTTTGTTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAA
U12 Branch Point Sequence:
GGTATTAAAACT
Flanking Amino Acid:
YEKRPLYVLKFSTGGSNRPA
Intron Amino Acid Position:
161

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
1
71
35.1
Major BPS
82.6
0.81
0.8
82.2
24.5
Major PPT
89.9
0.9
0.7
88
29.4
Minor 5ss
43.1
-0.8
3
56.5
47.9
Minor BPS
45.2
-0.2
1.9
62.69
41.2

Associated Gene:

Gene:
CPA2
Ensembl Gene ID:
ENSAPLG00000005551
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005786
1114443 - 1122885
8443