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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_1118513_1119192_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1118513 - 1119192
Intron Length:
680

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCT|GTGAGTTCC
5'SS Class:
major
3'SS Sequence:
CTTTTCATTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TGGCTTTTCATT
Flanking Amino Acid:
NYGIYHSLSSIYEELDNLAS
Intron Amino Acid Position:
127

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.3
0.48
1.1
65.2
35.2
Major BPS
100
1.24
0.5
100
0
Major PPT
86
0.81
0.8
77.9
35.1
Minor 5ss
38.9
-1.2
2.9
55
42.2
Minor BPS
48.7
-0
1.7
64.98
40.4

Associated Gene:

Gene:
CPA2
Ensembl Gene ID:
ENSAPLG00000005551
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005786
1114443 - 1122885
8443