About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_1119289_1120051_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1119289 - 1120051
Intron Length:
763

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGTGAT
5'SS Class:
strong_major
3'SS Sequence:
TTATTTCTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTGAA
U12 Branch Point Sequence:
CTTTCCTCAAAA
Flanking Amino Acid:
EYSILIEDLQAVLDREKQEM
Intron Amino Acid Position:
95

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.4
0.88
0.9
81.4
32.7
Major BPS
78.4
0.71
0.9
69.4
37.7
Major PPT
86.3
0.82
0.7
85.7
28.7
Minor 5ss
33
-1.9
3.5
48.2
47.9
Minor BPS
67.6
0.55
1.7
77.18
39.5

Associated Gene:

Gene:
CPA2
Ensembl Gene ID:
ENSAPLG00000005551
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005786
1114443 - 1122885
8443