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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_1120187_1121067_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1120187 - 1121067
Intron Length:
881

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACGTTAT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCTTCTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACCAAAT
U12 Branch Point Sequence:
TTTCCCCCAAAC
Flanking Amino Acid:
QFLETLEHLKLDFWINPSTF
Intron Amino Acid Position:
50

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.3
0.9
0.9
84.2
29.7
Major BPS
55.9
0.15
1
61.2
32.6
Major PPT
92.7
0.96
0.6
92.4
17.8
Minor 5ss
40.8
-1
3.1
57.9
46.7
Minor BPS
50.8
0
2
71.02
39.2

Associated Gene:

Gene:
CPA2
Ensembl Gene ID:
ENSAPLG00000005551
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005786
1114443 - 1122885
8443