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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_112078166_112100610_F

Intron Information:

Intron Rank:
147058
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
112078166 - 112100610
Intron Length:
22445

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTGAA
5'SS Class:
strong_major
3'SS Sequence:
ACGAACACCACAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
CTCTCAT
U12 Branch Point Sequence:
TCTCCACGAACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.5
0.91
0.8
79.4
28.8
Major BPS
82.6
0.81
0.9
83.3
27.7
Major PPT
53.4
0.08
1
43.6
36.5
Minor 5ss
32.1
-2
3.1
36.8
41.9
Minor BPS
47
-0.2
2
64.29
41.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029191
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035303
112077535 - 112101448
23914