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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_112097751_112098520_R

Intron Information:

Intron Rank:
130276
Intron Class:
major
Intron Phase:
Intron Coordinates:
112097751 - 112098520
Intron Length:
770

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGAAAC
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTACCACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTTTATTTATCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.3
0.81
0.9
76.8
31.7
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
82.1
0.72
0.8
77.3
30
Minor 5ss
39.9
-1.1
2.8
51.4
45.5
Minor BPS
68.4
0.66
1.7
88.82
36

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017299
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024987
112092782 - 112099132
6351