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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_1121150_1122612_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1121150 - 1122612
Intron Length:
1463

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGAGTCAC
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTATTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTCAT
U12 Branch Point Sequence:
ATCTCGATAACC
Flanking Amino Acid:
GAALCLETFVGHQVLRIKIK
Intron Amino Acid Position:
22

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.7
0.72
1
68.4
38.7
Major BPS
83.4
0.83
0.8
83.7
25.7
Major PPT
89.5
0.89
0.7
85.1
27.9
Minor 5ss
28.6
-2.5
2.7
27.3
36.3
Minor BPS
51.5
0.03
2.3
69.63
41.7

Associated Gene:

Gene:
CPA2
Ensembl Gene ID:
ENSAPLG00000005551
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005786
1114443 - 1122885
8443