Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_112518693_112534675_F

Intron Information:

Intron Rank:

132260

Intron Class:

major

Intron Phase:

Intron Coordinates:

112518693 - 112534675

Intron Length:

15983

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAGGACAA

5'SS Class:

strong_major

3'SS Sequence:

ATCTCCTGTTTAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTAAT

U12 Branch Point Sequence:

TATTTTTTAATC

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.3

0.71

67.8

39.3

Major BPS

99.5

1.23

0.5

98.2

4.2

Major PPT

71.6

0.49

0.9

35.9

Minor 5ss

29.9

-2.3

3.3

38.1

46.8

Minor BPS

76.7

0.82

78.69

30.3

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000021057

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000020658

112518431 - 112549875

31445