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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_112534768_112549570_F

Intron Information:

Intron Rank:
132261
Intron Class:
major
Intron Phase:
Intron Coordinates:
112534768 - 112549570
Intron Length:
14803

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGTCCA
5'SS Class:
major
3'SS Sequence:
TGACTTTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTACAC
U12 Branch Point Sequence:
TCTTCTTTTACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.9
0.59
1.1
65.7
40.1
Major BPS
72.8
0.57
1
81
30.3
Major PPT
82
0.72
0.9
76.7
37.2
Minor 5ss
36.7
-1.5
2.9
48.4
41.1
Minor BPS
71.5
0.67
1.6
78.96
37.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021057
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020658
112518431 - 112549875
31445