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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_112569037_112588203_F

Intron Information:

Intron Rank:
132269
Intron Class:
major
Intron Phase:
Intron Coordinates:
112569037 - 112588203
Intron Length:
19167

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAGGTAAG
5'SS Class:
major
3'SS Sequence:
CTTTCTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAC
U12 Branch Point Sequence:
TTCATTCTAACC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.8
0.63
1.1
68.8
43.8
Major BPS
84.6
0.86
0.8
83.9
22.3
Major PPT
93.1
0.97
0.6
91.8
19
Minor 5ss
33.2
-1.9
2.9
33.1
42.1
Minor BPS
54.5
0.12
1.7
67
38.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021057
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045848
112568342 - 112588733
20392