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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_112581909_112586504_F

Intron Information:

Intron Rank:
132263
Intron Class:
major
Intron Phase:
Intron Coordinates:
112581909 - 112586504
Intron Length:
4596

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGTATT
5'SS Class:
strong_major
3'SS Sequence:
TTTTACACTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTCAT
U12 Branch Point Sequence:
GTCTCTTTTACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.9
0.99
0.8
92.6
23.2
Major BPS
87.1
0.92
0.7
85.9
22.5
Major PPT
81.4
0.71
0.8
75.2
34.1
Minor 5ss
47.8
-0.2
2.5
68.3
42.6
Minor BPS
64.9
0.46
1.6
71.82
40.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021057
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025289
112580873 - 112588733
7861