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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_112659643_112809021_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
112659643 - 112809021
Intron Length:
149379

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGAGT
5'SS Class:
strong_major
3'SS Sequence:
CTACCTATTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTGCAT
U12 Branch Point Sequence:
TTTGCATCTACC
Flanking Amino Acid:
RPVAVMLFAAEFARNGGTIT
Intron Amino Acid Position:
123

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91
0.97
0.8
82.5
37
Major BPS
75
0.62
1.4
85.7
34.9
Major PPT
72.8
0.51
0.9
70.3
34.6
Minor 5ss
34
-1.8
3.3
48.8
47
Minor BPS
47.6
-0.2
2.2
68.48
42.8

Associated Gene:

Gene:
TMEM47
Ensembl Gene ID:
ENSAPLG00000007982
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048490
112645264 - 112849982
204719
ENSAPLT00000020793
112645264 - 112879824
234561