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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_112809130_112879786_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
112809130 - 112879786
Intron Length:
70657

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGAGA
5'SS Class:
strong_major
3'SS Sequence:
ATGTTATTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
GAAACTTTAAAT
Flanking Amino Acid:
ELLLCSEAIEGMLENQYKSR
Intron Amino Acid Position:
159

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90
0.94
0.8
78.7
37.2
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
81.3
0.7
0.9
78.3
39.6
Minor 5ss
31.6
-2.1
3.1
40
45.7
Minor BPS
59.8
0.39
1.4
69.46
40.5

Associated Gene:

Gene:
TMEM47
Ensembl Gene ID:
ENSAPLG00000007982
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020793
112645264 - 112879824
234561