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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_112958850_112961474_R

Intron Information:

Intron Rank:
131946
Intron Class:
major
Intron Phase:
Intron Coordinates:
112958850 - 112961474
Intron Length:
2625

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTTGC
5'SS Class:
strong_major
3'SS Sequence:
GTTTTTTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTTT
U12 Branch Point Sequence:
TTTTGTTTGTTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95
1.06
0.7
82.3
32.2
Major BPS
38.1
-0.7
4.3
71.7
44.6
Major PPT
92.5
0.96
0.7
88.3
28.9
Minor 5ss
40.5
-1.1
2.8
53
44.2
Minor BPS
42.8
-0.4
3.6
78.01
39.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018206
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045872
112958457 - 112961772
3316