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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_112964640_112970667_F

Intron Information:

Intron Rank:
142733
Intron Class:
major
Intron Phase:
Intron Coordinates:
112964640 - 112970667
Intron Length:
6028

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCTGTTGA
5'SS Class:
major
3'SS Sequence:
TATTTATTGACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TATTTATTGACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.5
0.53
1.3
67.6
40.3
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
77.1
0.61
1
73.3
40.8
Minor 5ss
41.1
-1
2.6
50.4
45.9
Minor BPS
65.9
0.49
1.6
76.21
34.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026951
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017862
112963738 - 112970806
7069