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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_113268665_113270427_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
113268665 - 113270427
Intron Length:
1763

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
TAG|GCATTTTTG
5'SS Class:
major
3'SS Sequence:
TAATTCTAATCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTGTAAT
U12 Branch Point Sequence:
TTTTGTTGAATA
Flanking Amino Acid:
WKRLDTRCQVVLYFSLADER
Intron Amino Acid Position:
31

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76
0.61
1.2
64.2
42.4
Major BPS
72.1
0.55
1.2
73.3
39.1
Major PPT
68.7
0.42
1
68.1
42
Minor 5ss
39.6
-1.2
3.9
57.9
46.8
Minor BPS
60.4
0.32
1.8
75.76
36

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022874
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037587
113268574 - 113270818
2245