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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_113270501_113270778_F

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
113270501 - 113270778
Intron Length:
278

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTTTGCTAA
5'SS Class:
weak_major
3'SS Sequence:
ACTGGTTATACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
TTTTCTCAAACT
Flanking Amino Acid:
KKTFTKWINAQYLTVSWTPL
Intron Amino Acid Position:
55

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
50.4
0.01
1.2
50
37.1
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
68.9
0.43
1
61.4
43.3
Minor 5ss
47.8
-0.2
2.5
62
43.7
Minor BPS
63.7
0.51
2
88.42
36.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022874
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037587
113268574 - 113270818
2245