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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_113357771_113364379_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
113357771 - 113364379
Intron Length:
6609

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTGGC
5'SS Class:
strong_major
3'SS Sequence:
GCTCTTTCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AGTTCAA
U12 Branch Point Sequence:
AGTTCAATCACT
Flanking Amino Acid:
LIWNIILHWQVKDVMKNIMA
Intron Amino Acid Position:
70

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90
0.94
0.8
75.7
34.4
Major BPS
66.8
0.42
1.1
69.4
37.7
Major PPT
82.2
0.72
0.8
76.6
32
Minor 5ss
27.6
-2.6
3
34.8
41.6
Minor BPS
48
-0
2.3
73.83
42.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007792
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008080
113357525 - 113484406
126882